8H7R
Structure of nanobody 11A in complex with coumaphos
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-01 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 0.979176 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 84.166, 84.166, 32.301 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.530 - 2.000 |
R-factor | 0.2261 |
Rwork | 0.224 |
R-free | 0.26110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8h7i |
RMSD bond length | 0.002 |
RMSD bond angle | 0.450 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.080 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.096 | 0.799 |
Number of reflections | 9112 | 664 |
<I/σ(I)> | 12.4 | 3.9 |
Completeness [%] | 99.8 | 99.1 |
Redundancy | 8.1 | 7.9 |
CC(1/2) | 0.998 | 0.931 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 293.15 | 0.1 M citric acid, pH 3.5, 0.8 M ammonium sulfate |