8H79
The crystal structure of cyanorhodopsin-II (CyR-II) P7104R from Nodosilinea nodulosa PCC 7104
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2020-07-02 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1 |
Spacegroup name | P 3 2 1 |
Unit cell lengths | 63.150, 63.150, 117.760 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.600 - 2.070 |
R-factor | 0.2072 |
Rwork | 0.203 |
R-free | 0.24770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1c3w |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.600 | 49.600 | 2.200 |
High resolution limit [Å] | 2.070 | 6.210 | 2.070 |
Rmerge | 0.227 | 0.050 | 1.645 |
Rmeas | 0.236 | 0.053 | 1.716 |
Total number of observations | 213269 | ||
Number of reflections | 17190 | 720 | 2824 |
<I/σ(I)> | 10.25 | 31.97 | 1.8 |
Completeness [%] | 99.8 | 99.2 | 100 |
Redundancy | 12.407 | 12.032 | 12.394 |
CC(1/2) | 0.997 | 0.997 | 0.623 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 6.8 | 293 | 100mM HEPES, 46% PEG 400, 400mM lithium sulfate |