8H43
Crystal structure of PHF1 Tudor domain in complex with hit 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-08-20 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9785 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 42.718, 42.718, 401.905 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.921 - 2.300 |
R-factor | 0.2557 |
Rwork | 0.254 |
R-free | 0.28890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4hcz |
Data reduction software | XDS |
Data scaling software | SCALA (0.7.7) |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.990 | 36.990 | 2.390 |
High resolution limit [Å] | 2.300 | 8.610 | 2.300 |
Rmerge | 0.126 | 0.112 | 0.932 |
Rmeas | 0.133 | 0.120 | 0.985 |
Rpim | 0.042 | 0.043 | 0.313 |
Total number of observations | 111123 | 2076 | 10780 |
Number of reflections | 10935 | 302 | 1109 |
<I/σ(I)> | 13.4 | 23.5 | 2.4 |
Completeness [%] | 99.9 | 99.2 | 100 |
Redundancy | 10.2 | 6.9 | 9.7 |
CC(1/2) | 0.994 | 0.991 | 0.818 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.15 M sodium citrate, 2 M ammonium sulfate, pH 5.5 |