8H27
Crystal structure of MnmM from S. aureus complexed with SAM (2.04 A)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-06-29 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.97949 |
Spacegroup name | P 43 |
Unit cell lengths | 114.015, 114.015, 67.009 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.460 - 2.040 |
R-factor | 0.19058 |
Rwork | 0.189 |
R-free | 0.22359 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlphaFold model (UniProt: Q2FXG9) |
RMSD bond length | 0.010 |
RMSD bond angle | 1.313 |
Data reduction software | XDS (Jan 10, 2022) |
Data scaling software | STARANISO |
Phasing software | MOLREP (11.9.02) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.460 | 2.230 |
High resolution limit [Å] | 2.040 | 2.040 |
Rmerge | 0.108 | 2.271 |
Rmeas | 0.112 | 2.353 |
Rpim | 0.030 | 0.615 |
Number of reflections | 46406 | 4642 |
<I/σ(I)> | 17.8 | 1.4 |
Completeness [%] | 84.6 | 36.4 |
Redundancy | 13.9 | 14.6 |
CC(1/2) | 0.999 | 0.627 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M lithium sulfate monohydrate, 0.1 M BIS-TRIS pH 6.5, and 25% w/v PEG3350 |