8H24
Leucine-rich alpha-2-glycoprotein 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-17 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 143.018, 143.018, 113.728 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.270 - 2.450 |
R-factor | 0.1885 |
Rwork | 0.186 |
R-free | 0.21940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | NGL3 3zyn |
RMSD bond length | 0.009 |
RMSD bond angle | 1.204 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX (1.15.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.540 |
High resolution limit [Å] | 2.450 | 5.280 | 2.450 |
Rmerge | 0.175 | 0.075 | 0.790 |
Rmeas | 0.177 | 0.076 | 0.800 |
Rpim | 0.028 | 0.013 | 0.127 |
Total number of observations | 1025968 | ||
Number of reflections | 25623 | 2765 | 2503 |
<I/σ(I)> | 4.4 | ||
Completeness [%] | 99.9 | 99.4 | 100 |
Redundancy | 40 | 37.4 | 39 |
CC(1/2) | 0.999 | 0.965 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 291 | 200mM lithium sulfate, 100mM sodium acetate pH4.5, 48% PEG 400 (v/v) |