8H1L
Crystal structure of glucose-2-epimerase in complex with D-Glucitol from Runella slithyformis Runsl_4512
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2020-06-27 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.000000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 146.242, 172.731, 150.457 |
Unit cell angles | 90.00, 116.96, 90.00 |
Refinement procedure
Resolution | 48.530 - 2.330 |
R-factor | 0.1806 |
Rwork | 0.179 |
R-free | 0.20770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3vw5 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.868 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17_3644) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.530 | 2.420 |
High resolution limit [Å] | 2.330 | 2.330 |
Rmerge | 0.109 | 0.553 |
Number of reflections | 140052 | 51624 |
<I/σ(I)> | 9.66 | |
Completeness [%] | 99.2 | |
Redundancy | 3.6 | |
CC(1/2) | 0.994 | 0.784 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 3.6M sodium formate, 486 mM D-glucitol |