8GYN
zebrafish TIPE1 strucutre in complex with PE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-05-31 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97918 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 34.080, 65.920, 35.490 |
Unit cell angles | 90.00, 106.55, 90.00 |
Refinement procedure
Resolution | 25.660 - 1.380 |
R-factor | 0.1488 |
Rwork | 0.146 |
R-free | 0.18400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3f4m |
RMSD bond length | 0.004 |
RMSD bond angle | 0.617 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.020 | 1.420 |
High resolution limit [Å] | 1.380 | 1.380 |
Rmerge | 0.057 | 0.394 |
Number of reflections | 30289 | 2169 |
<I/σ(I)> | 16.4 | 4.7 |
Completeness [%] | 98.8 | 94.9 |
Redundancy | 6.1 | 4.5 |
CC(1/2) | 0.997 | 0.888 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 0.1 M succinic acid, pH 7.0, 12% (w/v) PEG 3350 |