8GXG
The crystal structure of SARS-CoV-2 main protease in complex with 14a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-09-01 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 96.399, 81.646, 54.436 |
Unit cell angles | 90.00, 117.19, 90.00 |
Refinement procedure
Resolution | 29.740 - 1.690 |
R-factor | 0.1683 |
Rwork | 0.167 |
R-free | 0.20610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6lu7 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.740 | 29.740 | 1.740 |
High resolution limit [Å] | 1.690 | 7.570 | 1.690 |
Rmerge | 0.046 | 0.027 | 0.977 |
Rmeas | 0.050 | 0.029 | 1.060 |
Total number of observations | 279908 | ||
Number of reflections | 41338 | 467 | 2878 |
<I/σ(I)> | 21.27 | 60.87 | 2.17 |
Completeness [%] | 98.8 | 93.2 | 94 |
Redundancy | 6.771 | 6.36 | 6.576 |
CC(1/2) | 0.999 | 0.999 | 0.813 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 293.15 | 5% polyethylene glycol (PEG) 6000, 3% DMSO, 0.1M MES buffer (pH 6.0), protein concentration 5mg/ml |