8GX9
Crystal structure of SARS-CoV-2 RBD with P2C-1F11 and P2B-1G5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9769 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 110.511, 154.856, 158.423 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.080 - 4.010 |
R-factor | 0.2411 |
Rwork | 0.238 |
R-free | 0.29690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7cdi |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.080 | 4.153 |
High resolution limit [Å] | 4.010 | 4.010 |
Rmerge | 0.290 | |
Number of reflections | 23031 | 2097 |
<I/σ(I)> | 4.8 | |
Completeness [%] | 97.3 | |
Redundancy | 6.3 | |
CC(1/2) | 0.505 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291.15 | 0.2M sodium chloride, 0.1M MES, pH 6.0, 20% PEG 2000 MME |