8GTZ
Crystal structure of exopolyphosphatase (PPX) mutant E137A from Zymomonas mobilis in complex with magnesium ions
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-06-10 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.98 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 122.740, 47.901, 94.892 |
Unit cell angles | 90.00, 126.53, 90.00 |
Refinement procedure
Resolution | 42.550 - 1.560 |
R-factor | 0.1718 |
Rwork | 0.170 |
R-free | 0.20370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8gty |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.590 |
High resolution limit [Å] | 1.560 | 4.230 | 1.560 |
Rmerge | 0.043 | 0.025 | 0.308 |
Rmeas | 0.051 | 0.030 | 0.375 |
Rpim | 0.028 | 0.016 | 0.212 |
Total number of observations | 206483 | ||
Number of reflections | 63367 | 3305 | 3094 |
<I/σ(I)> | 9.9 | ||
Completeness [%] | 99.6 | 99.6 | 98.2 |
Redundancy | 3.3 | 3.3 | 2.9 |
CC(1/2) | 0.998 | 0.872 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 293 | 50 mM Tris pH 8.0, 500 mM NaCl, 5% glycerol 0.2 M magnesium chloride hexahydrate, 0.1 M Tris pH 6.5, 25%(w/v) polyethylene glycol 3350 |