Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8GRT

Small Dipeptide Analogues developed by Co-crystal Structure of Stenotrophomonas maltophilia Dipeptidyl Peptidase 7

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL44XU
Synchrotron siteSPring-8
BeamlineBL44XU
Temperature [K]100
Detector technologyCCD
Collection date2016-10-26
DetectorRAYONIX MX-300
Wavelength(s)0.9
Spacegroup nameP 1 21 1
Unit cell lengths67.200, 74.250, 154.590
Unit cell angles90.00, 95.11, 90.00
Refinement procedure
Resolution30.002 - 2.590
Rwork0.175
R-free0.24290
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7dkb
RMSD bond length0.007
RMSD bond angle1.413
Data reduction softwareXDS (20161205)
Phasing softwarePHASER (2.8.3)
Refinement softwareREFMAC (5.8.0352)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]34.5802.630
High resolution limit [Å]2.5902.590
Rmerge0.1090.565
Rmeas0.128
Rpim0.0660.361
Number of reflections470081999
<I/σ(I)>10.4
Completeness [%]99.084.8
Redundancy3.72.1
CC(1/2)0.9940.727
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.529320% PEG 8000, 200mM Amm. Acetate, 20% Glycerol

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon