8GRT
Small Dipeptide Analogues developed by Co-crystal Structure of Stenotrophomonas maltophilia Dipeptidyl Peptidase 7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-26 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.9 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 67.200, 74.250, 154.590 |
Unit cell angles | 90.00, 95.11, 90.00 |
Refinement procedure
Resolution | 30.002 - 2.590 |
Rwork | 0.175 |
R-free | 0.24290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7dkb |
RMSD bond length | 0.007 |
RMSD bond angle | 1.413 |
Data reduction software | XDS (20161205) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.580 | 2.630 |
High resolution limit [Å] | 2.590 | 2.590 |
Rmerge | 0.109 | 0.565 |
Rmeas | 0.128 | |
Rpim | 0.066 | 0.361 |
Number of reflections | 47008 | 1999 |
<I/σ(I)> | 10.4 | |
Completeness [%] | 99.0 | 84.8 |
Redundancy | 3.7 | 2.1 |
CC(1/2) | 0.994 | 0.727 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 20% PEG 8000, 200mM Amm. Acetate, 20% Glycerol |