8GPT
YFV_E_YD6scFv_postfusion
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-19 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 228.536, 150.866, 126.418 |
Unit cell angles | 90.00, 112.00, 90.00 |
Refinement procedure
Resolution | 49.620 - 3.070 |
R-factor | 0.2129 |
Rwork | 0.211 |
R-free | 0.24680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jhl |
RMSD bond length | 0.004 |
RMSD bond angle | 0.672 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.210 |
High resolution limit [Å] | 3.070 | 3.100 |
Number of reflections | 70474 | 6984 |
<I/σ(I)> | 10.3 | |
Completeness [%] | 98.7 | |
Redundancy | 5.5 | |
CC(1/2) | 0.995 | 0.642 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289.15 | in 0.1M ammonium sulfate, 0.3M sodium formate, 0.1M sodium acetate, 3% (w/v) PGA-LM, 5% (w/v) PEG 8,000, pH5.0 |