8GFJ
Crystal structure of soluble lytic transglycosylase Cj0843 of Campylobacter jejuni dose-response soaking with 1 mM concentration Z7285 inhibitor (no inhibitor binding observed)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | I 2 3 |
Unit cell lengths | 177.604, 177.604, 177.604 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.710 - 2.200 |
R-factor | 0.18947 |
Rwork | 0.188 |
R-free | 0.21497 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6cf9 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.577 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0349) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.710 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.109 | 2.290 |
Rmeas | 0.112 | 2.356 |
Rpim | 0.026 | 0.549 |
Total number of observations | 853505 | 73101 |
Number of reflections | 47185 | 4031 |
<I/σ(I)> | 20.6 | 1.5 |
Completeness [%] | 99.9 | |
Redundancy | 18.1 | 18.1 |
CC(1/2) | 0.999 | 0.535 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.9 | 293 | 0.1 M sodium citrate pH 5.9 and 26% (v/v) PEG 600. Protein buffer was 10 mM HEPES pH 8.0, 200 mM ammonium acetate buffer |