8GD5
Crystal Structure of HIV-1 LM/HT Clade A/E CRF01 GP120 Core in Complex with DL-I-102
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-06-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 63.395, 66.792, 92.123 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.540 - 2.600 |
R-factor | 0.2213 |
Rwork | 0.219 |
R-free | 0.27420 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.360 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.19.1_4122: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.154 | 0.983 |
Rpim | 0.090 | 0.650 |
Number of reflections | 10748 | 562 |
<I/σ(I)> | 17.3 | 1.1 |
Completeness [%] | 86.1 | 90.2 |
Redundancy | 3.7 | 3.1 |
CC(1/2) | 0.940 | 0.600 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 294 | 10% PEG 3350 5% PEG 400 0.1 M HEPES pH 7.5 |