Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8GD0

Crystal Structure of HIV-1 LM/HT Clade A/E CRF01 GP120 Core in Complex with TFH-I-070-A6

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2020-01-19
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97946
Spacegroup nameP 21 21 21
Unit cell lengths63.577, 66.275, 91.388
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.880 - 2.400
R-factor0.2207
Rwork0.218
R-free0.27350
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle0.963
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX ((1.17.1_3660: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.440
High resolution limit [Å]2.4002.400
Rmerge0.0910.579
Rpim0.0510.323
Number of reflections13796597
<I/σ(I)>12.31.3
Completeness [%]88.378.2
Redundancy3.63.7
CC(1/2)0.9800.710
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529410% PEG 3350 5% PEG 400 0.1 M HEPES pH 7.5

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon