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8G49

FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, Oxadiazolone compound 3 bound

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron siteAustralian Synchrotron
BeamlineMX2
Temperature [K]100
Detector technologyPIXEL
Collection date2022-08-11
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.954
Spacegroup nameP 32 2 1
Unit cell lengths46.434, 46.434, 218.372
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution39.550 - 1.600
R-factor0.1766
Rwork0.175
R-free0.19820
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.011
RMSD bond angle1.228
Data reduction softwareXDS
Data scaling softwareAimless (0.7.8)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20.1-4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.6701.630
High resolution limit [Å]1.6001.600
Rmerge0.0811.281
Rmeas0.0841.373
Rpim0.0220.485
Total number of observations50568312794
Number of reflections374281700
<I/σ(I)>151.4
Completeness [%]99.7
Redundancy13.57.5
CC(1/2)0.9990.581
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5289.1565uL 16.3 mg/ml FphE (10mM HEPES pH 7.6, 100mM NaCl) were mixed with 7.5uL compound3 (10mM in DMSO) and incubated at 4C overnight. 0.15 ul FphE-compound3 solution was mixed with 0.3 ul of reservoir solution. Sitting drop reservoir contained 25 ul of 160mM potassium thiocyanate, 180mM Tris pH 8.5, 20% PEG 2000 MME. Crystal appeared within 2.5 days at 16C. It was frozen in a solution of ~25% Ethylene glycol, 75% reservoir.

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