8G49
FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, Oxadiazolone compound 3 bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-08-11 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.954 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 46.434, 46.434, 218.372 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.550 - 1.600 |
R-factor | 0.1766 |
Rwork | 0.175 |
R-free | 0.19820 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.228 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.8) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1-4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.670 | 1.630 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.081 | 1.281 |
Rmeas | 0.084 | 1.373 |
Rpim | 0.022 | 0.485 |
Total number of observations | 505683 | 12794 |
Number of reflections | 37428 | 1700 |
<I/σ(I)> | 15 | 1.4 |
Completeness [%] | 99.7 | |
Redundancy | 13.5 | 7.5 |
CC(1/2) | 0.999 | 0.581 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 289.15 | 65uL 16.3 mg/ml FphE (10mM HEPES pH 7.6, 100mM NaCl) were mixed with 7.5uL compound3 (10mM in DMSO) and incubated at 4C overnight. 0.15 ul FphE-compound3 solution was mixed with 0.3 ul of reservoir solution. Sitting drop reservoir contained 25 ul of 160mM potassium thiocyanate, 180mM Tris pH 8.5, 20% PEG 2000 MME. Crystal appeared within 2.5 days at 16C. It was frozen in a solution of ~25% Ethylene glycol, 75% reservoir. |