8G2S
Horse liver alcohol dehydrogense His-51-Gln form complexed with NAD+ and capric acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2004-05-18 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 44.240, 51.250, 92.460 |
Unit cell angles | 92.01, 102.87, 109.91 |
Refinement procedure
Resolution | 19.980 - 1.450 |
R-factor | 0.15689 |
Rwork | 0.156 |
R-free | 0.18912 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1n8k |
RMSD bond length | 0.013 |
RMSD bond angle | 1.989 |
Data reduction software | d*TREK |
Data scaling software | d*TREK (9.9.9.8L) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.980 | 19.980 | 1.500 |
High resolution limit [Å] | 1.450 | 3.120 | 1.450 |
Rmerge | 0.033 | 0.024 | 0.210 |
Rmeas | 0.039 | 0.029 | 0.248 |
Total number of observations | 437190 | 49160 | 24944 |
Number of reflections | 114498 | 12784 | 6811 |
<I/σ(I)> | 23.8 | 66.9 | 4.3 |
Completeness [%] | 87.4 | ||
Redundancy | 3.79 | 3.74 | 3.55 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 7 | 278 | 10 mg/ml protein in 50 mM ammonium N-[tris(hydroxymethyl)methyl]-2-aminoethanesulfate buffer with 0.25 mM EDTA, 2 mM NAD+ and 1 mM sodium caprate, 13 % 2-methyl-2,4-pentanediol, raised to 25% MPD, then crystals soaked with 1 mM acetaldehyde at 278 K for 70 min and then with 100 mM sodium caprate for 2 h before pliunging into liquid N2. |