8G0W
Crystal structure of human norovirus GII.4 P domain in complex with Nanobody M4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-08-02 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.000000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 103.511, 90.675, 107.212 |
Unit cell angles | 90.00, 113.26, 90.00 |
Refinement procedure
Resolution | 48.820 - 2.870 |
R-factor | 0.2526 |
Rwork | 0.251 |
R-free | 0.29400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7jie |
RMSD bond length | 0.002 |
RMSD bond angle | 0.550 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.820 | 2.990 |
High resolution limit [Å] | 2.870 | 2.870 |
Rmerge | 0.154 | 0.468 |
Rpim | 0.106 | 0.330 |
Number of reflections | 41417 | 4625 |
<I/σ(I)> | 5.3 | 2 |
Completeness [%] | 99.0 | 98.5 |
Redundancy | 3.7 | |
CC(1/2) | 0.980 | 0.875 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 2% v/v Tacsimate TM pH 4.0, 0.1 M Sodium acetate trihydrate pH 4.6, 16% w/v Polyethylene glycol 3,350 |