8G0F
Crystal structure of diphtheria toxin H223Q/H257Q double mutant (pH 5.5)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-23 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 |
Unit cell lengths | 69.548, 69.471, 72.879 |
Unit cell angles | 117.99, 93.87, 99.34 |
Refinement procedure
Resolution | 36.310 - 2.250 |
R-factor | 0.1937 |
Rwork | 0.190 |
R-free | 0.25670 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 0.969 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.780 | 2.320 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.074 | 0.727 |
Rmeas | 0.088 | 0.869 |
Rpim | 0.047 | 0.469 |
Total number of observations | 182683 | 15664 |
Number of reflections | 52984 | 4660 |
<I/σ(I)> | 9.7 | 1.7 |
Completeness [%] | 95.8 | |
Redundancy | 3.4 | 3.4 |
CC(1/2) | 0.997 | 0.692 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | 20% (w/v) PEG 2000 MME, 100 mM sodium citrate tribasic, 200 mM sodium malonate |