8FZA
Class I type III preQ1 riboswitch from E. coli
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-04 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.8500 |
Spacegroup name | P 1 2 1 |
Unit cell lengths | 46.739, 32.272, 51.206 |
Unit cell angles | 90.00, 96.93, 90.00 |
Refinement procedure
Resolution | 36.530 - 2.300 |
R-factor | 0.2099 |
Rwork | 0.205 |
R-free | 0.25220 |
Structure solution method | SAD |
RMSD bond length | 0.002 |
RMSD bond angle | 0.465 |
Data reduction software | XDS (version 10-Jan-2022) |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHENIX (1.19.2_4158) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.530 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Rpim | 0.024 | 0.271 |
Number of reflections | 12805 | 1388 |
<I/σ(I)> | 16.7 | 2.8 |
Completeness [%] | 98.1 | 97.9 |
Redundancy | 22 | 16.3 |
CC(1/2) | 0.999 | 0.917 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 31% MPD, 0.05 M Na-cacodylate pH 6.0, 0.012 spermine-HCl, 0.1 M KCl and 0.002 M MgCl2, 0.005 M MnCl2-tetrahydrate |