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8FRD

Mouse acidic mammalian chitinase, catalytic domain in complex with N,N'-diacetylchitobiose at pH 5.25

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-06-15
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.11578
Spacegroup nameP 2 21 21
Unit cell lengths70.755, 92.451, 104.990
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution58.670 - 1.680
R-factor0.1405
Rwork0.139
R-free0.16780
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle0.910
Data reduction softwarexia2 (0.3.8.0)
Data scaling softwareDIALS (2.2.10-g6dafd9427-release)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]58.6701.740
High resolution limit [Å]1.6801.680
Rmerge0.1160.569
Rmeas0.1260.620
Rpim0.0500.242
Number of reflections781637593
<I/σ(I)>9.683.09
Completeness [%]98.797.03
Redundancy6.46.4
CC(1/2)0.9930.680
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.25293.1511 mg/mL AMCase catalytic domain 20% w/v PEG 6000 0.1 M Sodium Acetate pH 5.25 0.2 M Magnesium Chloride 29.00 mM GlcNAc2

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PDB entries from 2024-07-10

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