8FMG
Structure of CBASS Cap5 from Pseudomonas syringae as an activated tetramer with the cyclic dinucleotide 3'2'-c-diAMP ligand (3 tetramers in the AU)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-17 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 0.920105 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 145.192, 80.522, 406.841 |
Unit cell angles | 90.00, 90.62, 90.00 |
Refinement procedure
Resolution | 58.120 - 1.790 |
R-factor | 0.1816 |
Rwork | 0.179 |
R-free | 0.22540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8fmf |
RMSD bond length | 0.004 |
RMSD bond angle | 0.700 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 203.400 | 2.001 |
High resolution limit [Å] | 1.790 | 1.790 |
Rmerge | 0.071 | 0.645 |
Number of reflections | 267508 | 13376 |
<I/σ(I)> | 7 | |
Completeness [%] | 88.7 | |
Redundancy | 2.1 | |
CC(1/2) | 0.997 | 0.580 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M Bis-Tris, pH 5.5-6.0, 0.2 M magnesium chloride, 19-20% PEG3350 |