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8FI3

Bifunctional ligase/repressor BirA from Klebsiella pneumoniae complexed with biotin (Domain Swapped Dimer)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 19-ID
Synchrotron siteNSLS-II
Beamline19-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2022-12-10
DetectorDECTRIS EIGER2 XE 9M
Wavelength(s)0.9786
Spacegroup nameP 21 21 2
Unit cell lengths153.000, 84.437, 58.020
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.820 - 2.900
R-factor0.2451
Rwork0.242
R-free0.30590
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle0.653
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.8203.080
High resolution limit [Å]2.9002.900
Rmerge0.1491.158
Rmeas0.1621.265
Rpim0.0620.502
Total number of observations11460317046
Number of reflections172662720
<I/σ(I)>9.71.6
Completeness [%]99.7
Redundancy6.66.3
CC(1/2)0.9960.555
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5291Morpheus H2: 20%(v/v) Ethylene glycol, 10%(w/v) PEG 8000, 100 mM Imidazole/MES, pH 6.5, 20 mM DL-Glutamic acid, 20 mM DL-Alanine; 20 mM Glycine, 20 mM DL-Lysine monohydrochloride and 20 mM DL-Serine 20mg/ml protein and 4 mM Biotin, KlpnC.17896.a.B1.PW39036 at 30 mg/mL. Tray: Liu-S-043 drop C5, Puck: PSL0113, Cryo: 150% Morpheus G3.

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PDB entries from 2024-08-07

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