Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8F40

Engineering Crystals with Tunable Symmetries from 14- or 16-Base-Long DNA Strands

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-B
Synchrotron siteAPS
Beamline23-ID-B
Temperature [K]100
Detector technologyPIXEL
Collection date2022-11-04
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.03
Spacegroup nameP 43 2 2
Unit cell lengths36.785, 36.785, 103.334
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution36.780 - 2.450
R-factor0.2266
Rwork0.224
R-free0.26380
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)ideal B type DNA duplexes generated in Cadnano
RMSD bond length0.012
RMSD bond angle1.423
Data reduction softwareautoPROC
Data scaling softwareSTARANISO
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]36.7802.940
High resolution limit [Å]2.4502.450
Number of reflections2497201
<I/σ(I)>14.1
Completeness [%]87.2
Redundancy10.510.7
CC(1/2)1.0000.951
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29530 uM 0.005 M magnesium sulfate hydrate, 0.005 M HEPES sodium pH 7.0, 0.16 M lithium sulfate monohydrate, 6 % MPD at pH 7.0

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon