Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8F2Y

Structure of an alternating AT dodecamer: 5'-CGCGATATCGCG-3

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 17-ID-1
Synchrotron siteNSLS-II
Beamline17-ID-1
Temperature [K]100
Detector technologyPIXEL
Collection date2022-09-28
DetectorDECTRIS EIGER X 9M
Wavelength(s)1
Spacegroup nameP 21 21 21
Unit cell lengths25.486, 40.362, 66.692
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.710 - 1.780
R-factor0.2104
Rwork0.209
R-free0.22470
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1bna
RMSD bond length0.012
RMSD bond angle1.400
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.7101.840
High resolution limit [Å]1.7801.780
Rmerge0.156
Rmeas0.220
Rpim0.156
Number of reflections7017692
<I/σ(I)>11.2
Completeness [%]99.6
Redundancy2
CC(1/2)0.9940.955
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7298MPD, SODIUM CACODYLATE TRIHYDRATE, SPERMINE TETRACHLORIDE, SODIUM CHLROIDE, MAGNESIUM HEXAHYDRATE

238895

PDB entries from 2025-07-16

PDB statisticsPDBj update infoContact PDBjnumon