8EUA
Structure of SARS-CoV2 PLpro bound to a covalent inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 112.330, 112.330, 217.330 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.050 - 3.100 |
R-factor | 0.1945 |
Rwork | 0.191 |
R-free | 0.25340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6wx4 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.786 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.050 | 39.050 | 3.180 |
High resolution limit [Å] | 3.100 | 13.860 | 3.100 |
Rmerge | 0.436 | 0.051 | 7.050 |
Rmeas | 0.445 | 0.052 | 7.200 |
Total number of observations | 333876 | ||
Number of reflections | 13010 | 170 | 924 |
<I/σ(I)> | 10.91 | 48.86 | 1.25 |
Completeness [%] | 99.8 | 92.9 | 99.8 |
Redundancy | 25.663 | 21.218 | 24.488 |
CC(1/2) | 0.998 | 1.000 | 0.752 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | PEG 3350, CaCl2, CdCl2 and CoCl3 |