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8ESG

Bile Salt Hydrolase B from Lactobacillus gasseri with covalent inhibitor bound

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2021-08-01
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.03
Spacegroup nameP 61 2 2
Unit cell lengths157.362, 157.362, 140.718
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.950 - 2.180
R-factor0.2366
Rwork0.236
R-free0.25510
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7svh
RMSD bond length0.002
RMSD bond angle0.466
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.20_4459)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.9502.258
High resolution limit [Å]2.1802.180
Rmerge0.1256.367
Rmeas0.1286.518
Rpim0.0281.380
Number of reflections1009415296
<I/σ(I)>16.70.57
Completeness [%]99.898.6
Redundancy20.821.7
CC(1/2)1.0000.209
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.2 M Lithium Sulfate, 0.1 M CAPS:NaOH, pH 10.5, 2M Ammonium Sulfate. Crystals formed in a 2:1 ratio of protein:mother liquor. 2.5 uM protein was incubated with 50 uM inhibitor for 1h at 37oC. Mixture was washed 3x with buffer in a spin concentrator and then concentrated to 8 mg/mL final concentration.

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PDB entries from 2024-11-06

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