8ERH
HTLV-1 capsid protein C-terminal domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-04-08 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 56.982, 94.121, 96.020 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.720 - 1.470 |
R-factor | 0.1691 |
Rwork | 0.168 |
R-free | 0.19250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Alphafold2 prediction |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.000 | 49.000 | 1.490 |
High resolution limit [Å] | 1.470 | 8.040 | 1.470 |
Rmerge | 0.072 | 0.037 | 1.332 |
Rmeas | 0.075 | 0.038 | 1.390 |
Rpim | 0.021 | 0.011 | 0.386 |
Total number of observations | 1179696 | 7052 | 48334 |
Number of reflections | 88526 | 631 | 3990 |
<I/σ(I)> | 15.4 | 45 | 1.4 |
Completeness [%] | 99.6 | 98.9 | 92.1 |
Redundancy | 13.3 | 11.2 | 12.1 |
CC(1/2) | 0.999 | 0.999 | 0.688 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.2 | 293 | 1.5 M (NH4)2SO4, 0.1 M Na2HPO4, pH 4.2 |