8ERE
HTLV-1 capsid protein N-terminal domain triclinic crystal form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-04-08 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.79990 |
Spacegroup name | P 1 |
Unit cell lengths | 30.070, 30.560, 35.010 |
Unit cell angles | 75.03, 68.46, 89.62 |
Refinement procedure
Resolution | 31.310 - 0.870 |
R-factor | 0.1209 |
Rwork | 0.120 |
R-free | 0.13100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Alphafold2 prediction |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 31.310 | 31.310 | 0.890 |
High resolution limit [Å] | 0.870 | 4.770 | 0.870 |
Rmerge | 0.054 | 0.035 | 0.271 |
Rmeas | 0.058 | 0.039 | 0.321 |
Rpim | 0.022 | 0.017 | 0.169 |
Total number of observations | 565868 | 3378 | 13302 |
Number of reflections | 84819 | 545 | 3838 |
<I/σ(I)> | 17.8 | 40.6 | 4.1 |
Completeness [%] | 93.0 | 98.7 | 85.4 |
Redundancy | 6.7 | 6.2 | 3.5 |
CC(1/2) | 0.999 | 0.999 | 0.942 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 10% ethylene glycol, 10% PEG 8K, 0.1 M HEPES, pH 7.5 |