8EOL
CRYSTAL STRUCTURE OF NAGB-II PHOSPHOSUGAR ISOMERASE FROM SHEWANELLA DENITRIFICANS OS217 AT 2.17 A RESOLUTION
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-18 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.5419 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 72.378, 78.746, 96.856 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.251 - 2.170 |
R-factor | 0.1904 |
Rwork | 0.188 |
R-free | 0.23070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Structure with ligands GNPDA-GlcNol6P |
RMSD bond length | 0.010 |
RMSD bond angle | 1.025 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.259 | 2.240 |
High resolution limit [Å] | 2.170 | 2.170 |
Number of reflections | 29534 | 2539 |
<I/σ(I)> | 2.8 | |
Completeness [%] | 98.5 | |
Redundancy | 11 | |
CC(1/2) | 0.931 | 0.931 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 291 | 0.2 M MgCl2, 0.1 M Tris, pH 8.5, 30% w/v PEG 4000. Crystals grew in the presence of 1mM GlcNAc6P; however, no density for the ligand was observed in the electron density maps. |