8EN2
Structure of GII.10 norovirus in complex with Nanobody 34
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL14-1 |
Synchrotron site | SSRL |
Beamline | BL14-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976200 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 66.781, 80.528, 84.206 |
Unit cell angles | 90.00, 90.03, 90.00 |
Refinement procedure
Resolution | 51.400 - 1.850 |
R-factor | 0.2091 |
Rwork | 0.208 |
R-free | 0.23440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3onu |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 80.528 | 80.528 | 1.960 |
High resolution limit [Å] | 1.850 | 5.540 | 1.850 |
Rmerge | 0.074 | 0.026 | 1.107 |
Rmeas | 0.080 | 0.028 | 1.195 |
Total number of observations | 533312 | ||
Number of reflections | 75491 | 2899 | 12089 |
<I/σ(I)> | 16.48 | 61.76 | 1.73 |
Completeness [%] | 99.1 | 98.7 | 98.5 |
Redundancy | 7.065 | 7.1 | 7.015 |
CC(1/2) | 0.999 | 1.000 | 0.707 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | 1 M lithium chloride, 10% [w/v] PEG6000, and 0.1 M citric acid [pH 5] |