8EHB
Structure of Tannerella forsythia selenomethionine-derivatized potempin D mutant I53M
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 110 |
Detector technology | PIXEL |
Collection date | 2021-05-07 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97926 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 70.960, 78.150, 71.460 |
Unit cell angles | 90.00, 117.82, 90.00 |
Refinement procedure
Resolution | 63.200 - 2.400 |
R-factor | 0.218 |
Rwork | 0.218 |
R-free | 0.23580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlphaFold |
RMSD bond length | 0.009 |
RMSD bond angle | 1.201 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 63.200 | 2.550 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.147 | 1.517 |
Number of reflections | 27047 | 4462 |
<I/σ(I)> | 11.1 | 2.35 |
Completeness [%] | 99.2 | |
Redundancy | 6.7 | |
CC(1/2) | 0.998 | 0.776 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Isolated selenomethionine-derivatised PotD mutant I53M at 14 mgL in 5 mM Tris-HCl, 50 mM sodium chloride, 0.02% sodium azide pH 8.0 was crystallised with 20% PEG 3350, 0.2 M diammonium hydrogen citrate as reservoir solution |