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8EHB

Structure of Tannerella forsythia selenomethionine-derivatized potempin D mutant I53M

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]110
Detector technologyPIXEL
Collection date2021-05-07
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97926
Spacegroup nameP 1 21 1
Unit cell lengths70.960, 78.150, 71.460
Unit cell angles90.00, 117.82, 90.00
Refinement procedure
Resolution63.200 - 2.400
R-factor0.218
Rwork0.218
R-free0.23580
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)AlphaFold
RMSD bond length0.009
RMSD bond angle1.201
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.20_4459)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]63.2002.550
High resolution limit [Å]2.4002.400
Rmerge0.1471.517
Number of reflections270474462
<I/σ(I)>11.12.35
Completeness [%]99.2
Redundancy6.7
CC(1/2)0.9980.776
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293Isolated selenomethionine-derivatised PotD mutant I53M at 14 mgL in 5 mM Tris-HCl, 50 mM sodium chloride, 0.02% sodium azide pH 8.0 was crystallised with 20% PEG 3350, 0.2 M diammonium hydrogen citrate as reservoir solution

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