8E7B
Crystal structure of the p53 (Y107H) core domain monoclinic P form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 291 |
Detector technology | PIXEL |
Collection date | 2021-12-05 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 43.394, 68.636, 66.951 |
Unit cell angles | 90.00, 96.32, 90.00 |
Refinement procedure
Resolution | 43.130 - 2.500 |
R-factor | 0.2216 |
Rwork | 0.218 |
R-free | 0.27880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1tsr |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.780 | 47.780 | 2.600 |
High resolution limit [Å] | 2.500 | 9.010 | 2.500 |
Rmerge | 0.134 | 0.048 | 0.469 |
Total number of observations | 47603 | 1056 | 5356 |
Number of reflections | 13579 | 307 | 1541 |
<I/σ(I)> | 7.1 | 15.6 | 2.4 |
Completeness [%] | 99.3 | 98.8 | 99.9 |
Redundancy | 3.5 | 3.4 | 3.5 |
CC(1/2) | 0.990 | 0.998 | 0.856 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | 28 % (w/v) PEG 2000 MME, 100 mM Bis-Tris |