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8E75

Crystal structure of Pcryo_0616, the aminotransferase required to synthesize UDP-N-acetyl-3-amino-D-glucosaminuronic acid (UDP-GlcNAc3NA)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSEALED TUBE
Source detailsBRUKER D8 QUEST
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-02
DetectorBruker PHOTON II
Wavelength(s)1.5418
Spacegroup nameC 2 2 21
Unit cell lengths57.828, 96.344, 139.658
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution28.930 - 1.250
R-factor0.1548
Rwork0.154
R-free0.17040
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3nyu
RMSD bond length0.008
RMSD bond angle1.776
Data reduction softwareSAINT
Data scaling softwareSADABS
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0253)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.350
High resolution limit [Å]1.2501.250
Number of reflections10646021148
<I/σ(I)>19.52.7
Completeness [%]97.891.4
Redundancy7.83.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8293Protein incubated with 5 mM UDP and 1 mM PLP. Precipitant: 18 - 22% poly(ethylene glycol) 8000, 200 mM LiCl, and 100 mM HEPPS (pH 8.0)

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