8E4T
Crystal structure of the kinase domain of RTKC8 from the choanoflagellate Monosiga brevicollis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-03-05 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9998 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 81.059, 55.513, 60.637 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.550 - 1.950 |
R-factor | 0.2064 |
Rwork | 0.204 |
R-free | 0.25530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ueu |
RMSD bond length | 0.007 |
RMSD bond angle | 0.847 |
Data reduction software | XDS (Version Jan 26, 2018) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.555 | 2.000 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.231 | 3.648 |
Rmeas | 0.235 | 3.758 |
Rpim | 0.046 | 0.883 |
Number of reflections | 20593 | 1414 |
<I/σ(I)> | 12.4 | 0.9 |
Completeness [%] | 99.9 | 99.3 |
Redundancy | 26.2 | 17 |
CC(1/2) | 0.998 | 0.455 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | 0.1M SPG (Succinic acid, sodium dihydrogen phosphate and glycine) buffer pH 6.0, 25% (w/v) PEG 1500 Mixed 1:1 Protein: 10-15mg/mL in 50mM Tris pH 8.0, 200mM NaCl, 10% Glycerol, 0.5mM TCEP. |