8E1G
SARS-CoV-2 RBD in complex with Omicron-neutralizing antibody 2A10
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-16 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97930 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 102.896, 117.944, 150.311 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 9.990 - 2.570 |
R-factor | 0.1983 |
Rwork | 0.196 |
R-free | 0.24390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6xe1 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.953 |
Data reduction software | XDS (Feb 5, 2021) |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 92.790 | 2.610 |
High resolution limit [Å] | 2.570 | 2.570 |
Rmerge | 0.080 | 0.918 |
Number of reflections | 58806 | 2888 |
<I/σ(I)> | 16.1 | 2.1 |
Completeness [%] | 99.4 | 99.6 |
Redundancy | 6.7 | 7.1 |
CC(1/2) | 0.999 | 0.789 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 1 uL 7.4 mg/mL protein; 1 uL 23%w/v PEG 3350, 230 mM Ammonium fluoride |