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8E1G

SARS-CoV-2 RBD in complex with Omicron-neutralizing antibody 2A10

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2022-07-16
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.97930
Spacegroup nameP 21 21 21
Unit cell lengths102.896, 117.944, 150.311
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution9.990 - 2.570
R-factor0.1983
Rwork0.196
R-free0.24390
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6xe1
RMSD bond length0.008
RMSD bond angle0.953
Data reduction softwareXDS (Feb 5, 2021)
Data scaling softwareAimless (0.7.7)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]92.7902.610
High resolution limit [Å]2.5702.570
Rmerge0.0800.918
Number of reflections588062888
<I/σ(I)>16.12.1
Completeness [%]99.499.6
Redundancy6.77.1
CC(1/2)0.9990.789
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2931 uL 7.4 mg/mL protein; 1 uL 23%w/v PEG 3350, 230 mM Ammonium fluoride

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