8DZL
Structure of the K39Q mutant of rat somatic Cytochrome c at 1.36A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-11 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.12713 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 33.578, 61.153, 186.065 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 58.100 - 1.360 |
R-factor | 0.1431 |
Rwork | 0.141 |
R-free | 0.17960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5c0z |
RMSD bond length | 0.016 |
RMSD bond angle | 1.466 |
Data reduction software | AutoProcess |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 58.100 | 1.430 |
High resolution limit [Å] | 1.360 | 1.360 |
Rmerge | 0.088 | 0.797 |
Rmeas | 0.092 | 0.831 |
Rpim | 0.026 | 0.233 |
Number of reflections | 83554 | 12815 |
<I/σ(I)> | 13 | 2.4 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 12.1 | 12.5 |
CC(1/2) | 0.999 | 0.942 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 298 | Wizard Cryo 2#30: 40% PEG 600, 100mM Sodium Citrate pH 5.5 |