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8DXA

[C:Hg2+/Ag+:C--pH 7] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2021-12-12
DetectorDECTRIS EIGER2 X 9M
Wavelength(s)1.00743
Spacegroup nameH 3
Unit cell lengths105.986, 105.986, 94.271
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution32.880 - 4.210
R-factor0.2262
Rwork0.224
R-free0.25760
Structure solution methodSAD
RMSD bond length0.007
RMSD bond angle1.019
Data reduction softwareautoPROC
Data scaling softwareSTARANISO
Phasing softwareAutoSol
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]65.7604.710
High resolution limit [Å]4.2104.210
Number of reflections4044410
<I/σ(I)>8.7
Completeness [%]86.2
Redundancy10.7
CC(1/2)0.9990.209
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP729840 mM Tris, 125 mM Magnesium sulfate, 12 uM silver nitrate, 24 uM mercury chloride

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PDB entries from 2024-11-13

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