8DX0
VanSC CA domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-03 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9791 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 62.700, 40.230, 64.710 |
Unit cell angles | 90.00, 91.64, 90.00 |
Refinement procedure
Resolution | 34.160 - 1.450 |
R-factor | 0.1862 |
Rwork | 0.185 |
R-free | 0.20040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Six models from SwissModel combined with Ensembler |
RMSD bond length | 0.010 |
RMSD bond angle | 1.068 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 64.700 | 1.500 |
High resolution limit [Å] | 1.450 | 1.450 |
Rmerge | 0.036 | 0.600 |
Rmeas | 0.039 | 0.718 |
Rpim | 0.016 | 0.386 |
Number of reflections | 55912 | 4842 |
<I/σ(I)> | 22.8 | |
Completeness [%] | 97.1 | 84.7 |
Redundancy | 6.2 | 3.1 |
CC(1/2) | 0.999 | 0.682 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 7 | 277 | Protein was concentrated to 2.5 mg/mL in 20 mM Tris pH 7.8, 150 mM NaCl supplemented with 2.5 mM AMP-PNP and 5 mM MgCl2. Protein and precipitant were mixed in a volume ratio of 1:3 and incubated under Als Oil at 277 K; the precipitant solution was 22% (w/v) PEG 6000, 100 mM HEPES buffer at pH 7.0. Crystals of comparable appearance and diffraction quality were obtained using MES buffer at pH 6.0, and Tris buffer at pH 8.0. |