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8DX0

VanSC CA domain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 17-ID-1
Synchrotron siteNSLS-II
Beamline17-ID-1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-04-03
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.9791
Spacegroup nameP 1 21 1
Unit cell lengths62.700, 40.230, 64.710
Unit cell angles90.00, 91.64, 90.00
Refinement procedure
Resolution34.160 - 1.450
R-factor0.1862
Rwork0.185
R-free0.20040
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Six models from SwissModel combined with Ensembler
RMSD bond length0.010
RMSD bond angle1.068
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]64.7001.500
High resolution limit [Å]1.4501.450
Rmerge0.0360.600
Rmeas0.0390.718
Rpim0.0160.386
Number of reflections559124842
<I/σ(I)>22.8
Completeness [%]97.184.7
Redundancy6.23.1
CC(1/2)0.9990.682
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH7277Protein was concentrated to 2.5 mg/mL in 20 mM Tris pH 7.8, 150 mM NaCl supplemented with 2.5 mM AMP-PNP and 5 mM MgCl2. Protein and precipitant were mixed in a volume ratio of 1:3 and incubated under Als Oil at 277 K; the precipitant solution was 22% (w/v) PEG 6000, 100 mM HEPES buffer at pH 7.0. Crystals of comparable appearance and diffraction quality were obtained using MES buffer at pH 6.0, and Tris buffer at pH 8.0.

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PDB entries from 2024-07-10

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