8DX0
VanSC CA domain
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | NSLS-II BEAMLINE 17-ID-1 |
| Synchrotron site | NSLS-II |
| Beamline | 17-ID-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-04-03 |
| Detector | DECTRIS EIGER X 9M |
| Wavelength(s) | 0.9791 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 62.700, 40.230, 64.710 |
| Unit cell angles | 90.00, 91.64, 90.00 |
Refinement procedure
| Resolution | 34.160 - 1.450 |
| R-factor | 0.1862 |
| Rwork | 0.185 |
| R-free | 0.20040 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | Six models from SwissModel combined with Ensembler |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.068 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 64.700 | 1.500 |
| High resolution limit [Å] | 1.450 | 1.450 |
| Rmerge | 0.036 | 0.600 |
| Rmeas | 0.039 | 0.718 |
| Rpim | 0.016 | 0.386 |
| Number of reflections | 55912 | 4842 |
| <I/σ(I)> | 22.8 | |
| Completeness [%] | 97.1 | 84.7 |
| Redundancy | 6.2 | 3.1 |
| CC(1/2) | 0.999 | 0.682 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | MICROBATCH | 7 | 277 | Protein was concentrated to 2.5 mg/mL in 20 mM Tris pH 7.8, 150 mM NaCl supplemented with 2.5 mM AMP-PNP and 5 mM MgCl2. Protein and precipitant were mixed in a volume ratio of 1:3 and incubated under Als Oil at 277 K; the precipitant solution was 22% (w/v) PEG 6000, 100 mM HEPES buffer at pH 7.0. Crystals of comparable appearance and diffraction quality were obtained using MES buffer at pH 6.0, and Tris buffer at pH 8.0. |






