8DWM
Host-guest complex of bleomycin A2 fully bound to CTTAGTTATAACTAAG
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-10-01 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97948 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 52.808, 144.292, 49.885 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.880 - 2.990 |
R-factor | 0.2282 |
Rwork | 0.225 |
R-free | 0.29670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ztw |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.110 |
High resolution limit [Å] | 2.990 | 6.460 | 3.000 |
Rmerge | 0.086 | 0.042 | 0.287 |
Number of reflections | 7774 | 901 | 542 |
<I/σ(I)> | 12.5 | ||
Completeness [%] | 94.7 | 98.4 | 67.7 |
Redundancy | 3.8 | 4 | 3.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Crystals of the host-guest complex were grown in 5 mM magnesium acetate, 0.05 M ADA pH 6.5, 9% PEG4000. To obtain complexes with BLM, crystals were soaked in well solutions containing 0.1 mM BLM followed by stabilization in 9% PEG4000, 5 mM magnesium acetate, 100 mM HEPES, pH 8.0, 20% ethylene glycol, 0.25 mM BLM until unit cell changes correlating with binding of BLM were detected. |