8DQD
Structure of the Campylobacter concisus glycosyltransferase PglA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-E |
Synchrotron site | APS |
Beamline | 21-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-12 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979180 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 96.534, 96.534, 100.985 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 64.400 - 1.780 |
R-factor | 0.1741 |
Rwork | 0.173 |
R-free | 0.19730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6eji |
RMSD bond length | 0.009 |
RMSD bond angle | 1.078 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 83.600 | 1.820 |
High resolution limit [Å] | 1.780 | 1.780 |
Rmerge | 0.053 | |
Rmeas | 0.062 | |
Rpim | 0.024 | |
Number of reflections | 51992 | 2834 |
<I/σ(I)> | 14.9 | 1.2 |
Completeness [%] | 99.3 | 95.6 |
Redundancy | 6.7 | 6.1 |
CC(1/2) | 0.999 | 0.508 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 290.15 | 12% PEG 3350, 0.1 M sodium malonate pH 5.0 |