Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8DQ6

Structure of A. thaliana MIF/D-DT-like protein-1 (MDL1)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyPIXEL
Collection date2020-10-16
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9999
Spacegroup nameP 65
Unit cell lengths66.737, 66.737, 132.320
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.530 - 1.560
R-factor0.1833
Rwork0.182
R-free0.20700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7kqx
RMSD bond length0.006
RMSD bond angle0.824
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.18_3845: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.5301.620
High resolution limit [Å]1.5601.560
Rmerge0.0520.990
Rmeas0.054
Rpim0.0120.236
Number of reflections462834257
<I/σ(I)>31.45
Completeness [%]97.590.4
Redundancy20
CC(1/2)1.0000.878
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29350 mM Tris, pH 8.0, 0.2 M calcium acetate, 26% PEG8000, 30% ethylene glycol

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon