8DKO
Minimal PutA proline dehydrogenase domain (design #1) complexed with S-(-)-tetrahydro-2-furoic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-25 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 1 |
Unit cell lengths | 48.980, 54.232, 76.191 |
Unit cell angles | 104.02, 100.50, 108.86 |
Refinement procedure
Resolution | 47.940 - 1.800 |
R-factor | 0.1826 |
Rwork | 0.182 |
R-free | 0.22300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6x9a |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.940 | 47.940 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.101 | 0.061 | 0.666 |
Rmeas | 0.119 | 0.071 | 0.773 |
Rpim | 0.062 | 0.036 | 0.392 |
Total number of observations | 216976 | 1771 | 13292 |
Number of reflections | 59009 | 466 | 3503 |
<I/σ(I)> | 7.3 | 17.6 | 1.7 |
Completeness [%] | 92.2 | 90.5 | 93.1 |
Redundancy | 3.7 | 3.8 | 3.8 |
CC(1/2) | 0.993 | 0.992 | 0.802 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M potassium thiocyanate and 25% (w/v) PEG MME 2000 |