8DKF
Antibody DH1030.1 Fab fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 81.190, 103.120, 109.846 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.520 - 1.790 |
R-factor | 0.2397 |
Rwork | 0.239 |
R-free | 0.27370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6pdu |
RMSD bond length | 0.008 |
RMSD bond angle | 0.888 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.830 |
High resolution limit [Å] | 1.790 | 1.790 |
Rmerge | 0.121 | 0.846 |
Rmeas | 0.129 | 0.902 |
Rpim | 0.043 | 0.308 |
Number of reflections | 85926 | 4207 |
<I/σ(I)> | 36.67 | 1.93 |
Completeness [%] | 99.5 | 99.2 |
Redundancy | 9.7 | 8.3 |
CC(1/2) | 0.981 | 0.930 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 30% (v/v) MPD 100 mM Sodium acetate/ Acetic acid pH 4.5 25% (w/v) PEG 1500 |