8DE5
Structure of glyceraldehyde-3-phosphate dehydrogenase from Paracoccidioides lutzii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS SIRUS BEAMLINE MANACA |
Synchrotron site | LNLS SIRUS |
Beamline | MANACA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-02 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.97718 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 118.713, 118.713, 158.295 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 83.940 - 2.020 |
R-factor | 0.1665 |
Rwork | 0.165 |
R-free | 0.19640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7u4s |
RMSD bond length | 0.003 |
RMSD bond angle | 0.567 |
Data reduction software | DIALS (2.2.11-gad03a188b-release) |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 83.940 | 2.050 |
High resolution limit [Å] | 2.020 | 2.020 |
Rmerge | 0.606 | 3.767 |
Rmeas | 0.611 | 3.840 |
Rpim | 0.074 | 0.742 |
Number of reflections | 37329 | 1814 |
<I/σ(I)> | 10.4 | 1.1 |
Completeness [%] | 100.0 | 100 |
Redundancy | 56.6 | 26.6 |
CC(1/2) | 0.998 | 0.372 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9.3 | 291.15 | 0.2 M ammonium sulfate, 25.5% w/v PEG4000 |