8DB9
Adenosine/guanosine nucleoside hydrolase bound to inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.977 |
Spacegroup name | P 1 |
Unit cell lengths | 50.406, 75.382, 88.856 |
Unit cell angles | 65.47, 80.79, 87.32 |
Refinement procedure
Resolution | 38.130 - 2.890 |
R-factor | 0.265 |
Rwork | 0.260 |
R-free | 0.34110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlphaFold model |
RMSD bond length | 0.011 |
RMSD bond angle | 1.253 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.130 | 2.993 |
High resolution limit [Å] | 2.890 | 2.890 |
Rmerge | 0.192 | 0.129 |
Rmeas | 0.220 | 0.149 |
Rpim | 0.105 | 0.738 |
Number of reflections | 23552 | 2425 |
<I/σ(I)> | 6.9 | 1.1 |
Completeness [%] | 87.9 | 88.09 |
Redundancy | 4.2 | 3.7 |
CC(1/2) | 0.988 | 0.408 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 290 | 0.2 M ammonium sulfate, 25% PEG-3350, and 0.1 M Bis-tris, pH 5.5 |