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8D5I

Crystal structure of dihydropteroate synthase H182G mutant (folP-SMZ_B27) from soil uncultured bacterium in complex with pteroic acid and pyrophosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2019-10-19
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.978
Spacegroup nameP 21 21 2
Unit cell lengths87.167, 145.614, 36.801
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.410 - 1.820
R-factor0.1669
Rwork0.165
R-free0.21080
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5vis
RMSD bond length0.007
RMSD bond angle0.942
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.20_4459)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.850
High resolution limit [Å]1.8201.820
Rmerge0.1360.867
Rpim0.0750.583
Number of reflections428141703
<I/σ(I)>16.51.1
Completeness [%]98.379.5
Redundancy62.4
CC(1/2)0.982
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.529825% (w/v) PEG 3350, 1% DMSO, 0.1 M Hepes pH 7.5, 5 mM para-aminobenzoic acid, 1.2 mM 6-hydroxymethyl-7,8-dihydropterin pyrophosphate

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PDB entries from 2024-05-15

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