8D5F
The complex of Gtf2b neoantigen TGAARFDEF Presented by H2-Dd
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-E |
| Synchrotron site | APS |
| Beamline | 21-ID-E |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-04-02 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 0.98 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 52.300, 68.860, 109.440 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 47.233 - 2.310 |
| Rwork | 0.193 |
| R-free | 0.19910 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | {DB entry 5KD7 |
| RMSD bond length | 0.011 |
| RMSD bond angle | 1.979 |
| Data scaling software | SCALEPACK |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0350) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 47.233 | 2.390 |
| High resolution limit [Å] | 2.310 | 2.310 |
| Rmerge | 0.120 | 0.046 |
| Rmeas | 0.143 | 0.054 |
| Rpim | 0.077 | 0.027 |
| Number of reflections | 17756 | 17756 |
| <I/σ(I)> | 10.7 | |
| Completeness [%] | 99.2 | |
| Redundancy | 6 | 6 |
| CC(1/2) | 0.993 | 0.996 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.3 | 309.15 | 20% PEG3350, 200 nM sodium tartrate dibasic dihydrate |






