8D5F
The complex of Gtf2b neoantigen TGAARFDEF Presented by H2-Dd
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-E |
Synchrotron site | APS |
Beamline | 21-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-02 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.300, 68.860, 109.440 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.233 - 2.310 |
Rwork | 0.193 |
R-free | 0.19910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | {DB entry 5KD7 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.979 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0350) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.233 | 2.390 |
High resolution limit [Å] | 2.310 | 2.310 |
Rmerge | 0.120 | 0.046 |
Rmeas | 0.143 | 0.054 |
Rpim | 0.077 | 0.027 |
Number of reflections | 17756 | 17756 |
<I/σ(I)> | 10.7 | |
Completeness [%] | 99.2 | |
Redundancy | 6 | 6 |
CC(1/2) | 0.993 | 0.996 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.3 | 309.15 | 20% PEG3350, 200 nM sodium tartrate dibasic dihydrate |