8D29
Crystal structure of theophylline aptamer - apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.3 |
Synchrotron site | ALS |
Beamline | 5.0.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-12-04 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9765 |
Spacegroup name | P 1 |
Unit cell lengths | 76.151, 92.849, 93.639 |
Unit cell angles | 97.34, 90.32, 106.92 |
Refinement procedure
Resolution | 68.660 - 1.810 |
R-factor | 0.1772 |
Rwork | 0.175 |
R-free | 0.21140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6b14 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 68.660 | 1.875 |
High resolution limit [Å] | 1.810 | 1.810 |
Rmerge | 0.133 | 0.831 |
Rpim | 0.077 | 0.557 |
Number of reflections | 213222 | 20808 |
<I/σ(I)> | 7.92 | 2.82 |
Completeness [%] | 93.7 | 93.93 |
Redundancy | 3.8 | 2.9 |
CC(1/2) | 0.994 | 0.705 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.8 | 293 | PEG 3350, citrate bis-Tris propane |