8CLM
1.80 A crystal structure of RNA/2'-O-methyl-RNA heteroduplex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SEALED TUBE |
Source details | RIGAKU PhotonJet-S |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-04-12 |
Detector | RIGAKU HyPix-6000HE |
Wavelength(s) | 1.54184 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 30.103, 49.303, 55.868 |
Unit cell angles | 90.00, 97.15, 90.00 |
Refinement procedure
Resolution | 19.011 - 1.800 |
Rwork | 0.188 |
R-free | 0.25610 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 1.952 |
Data reduction software | CrysalisPro (41.100a) |
Data scaling software | Aimless (0.7.7) |
Phasing software | MOLREP (11.7.03) |
Refinement software | REFMAC (5.8.0403) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.011 | 1.840 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.081 | 0.636 |
Rmeas | 0.094 | 0.747 |
Rpim | 0.046 | 0.382 |
Number of reflections | 15124 | 868 |
<I/σ(I)> | 11.7 | 2.1 |
Completeness [%] | 99.7 | 100 |
Redundancy | 4.2 | 3.6 |
CC(1/2) | 0.998 | 0.817 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 1 mM duplex, 1.4 M Li2SO4, 50 mM sodium cacodylate, 1 mM spermine |